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Search RatMine. Enter names, identifiers or keywords for genes, proteins, pathways, ontology terms, authors, etc. (e.g. eve, HIPPO_DROME, glycolysis, hb allele).


Enter a list of identifiers.

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RatMine integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms. You can run flexible queries, export results and analyse lists of data.

The gene models and other genome annotation in RatMine are provided by a variety of source databases including: RGD, UniProt, Ensembl and over 30 other data sources including experimental data from publications and also from collaborations across multiple Rat specific researchers across the golobe. Read more

Query for genes:

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RatMine loads physical interactions from IntAct and BioGRID. Read more

Query for interactions:

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RatMine loads homologue predictions from Ensembl, KEGG and curated datasets from RGD. Read more

Query for homology:

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RatMineMine loads gene expression data for Rattus Norvegicus from GEO. Read more

Query for expression:

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You can run queries on whole lists of data. Create lists from the results of a query or by uploading identifiers. Click on a list to view graphs and summaries in a list analysis page, if you log in you can save lists permanently.

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Perl, Python, Ruby and  &  Java API

perl java python ruby

Access our RatMine data via our Application Programming Interface (API) too! We provide client libraries in the following languages: