RatMine

The gene models and other genome annotation in RatMine are provided by a variety of source databases including: RGD, UniProt, Ensembl and over 30 other data sources including experimental data from publications and also from collaborations across multiple Rat specific researchers across the golobe. Read more

Query for genes:

• Chromosome    All genes
• Gene    Overlapping QTLs
• Gene    Location
• Gene    Proteins.
• Protein    Gene.
• Disease Term and Chromosome    Genes
• Gene    Organism
• GeneSymbol s   Description

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RatMine loads physical interactions from IntAct and BioGRID. Read more

Query for interactions:

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RatMine loads homologue predictions from Ensembl, KEGG and curated datasets from RGD. Read more

Query for homology:

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RatMine loads Gene Ontology annotation from RGD; domain data from InterPro, Uniprot; disease data from OMIM, CTD; and pathways data from RGD Pathway Annotations and KEGG. Read more

Query for function:

• Gene    GO Terms
• Gene    Disease Ontology
• Gene    RGD Pathway Ontology
• GO term name [and children of this term]    Genes
• Disease Term [and children of this term] -> Genes
• Gene    Mammalian Phenotype Ontology
• Gene    Homologue Mammalian Phenotype
• Disease Term and Chromosome    Genes

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RatMineMine loads gene expression data for Rattus Norvegicus from GEO. Read more

Query for expression:

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